You can try this on your local file to check its validity, then upload a corrected version. This command attempts to view the BAM file and output the exit code of this procedure.
If the code is 1 or higher, there is a problem with the file. Try this check on your local file and then upload a corrected version. You should reupload the file to your submission area. Note that if you uploaded the original file to a subdirectory in your submission area, you must also upload the new file to this subdirectory. The processing pipeline expects to see the file for your run in the originally specified location, so this must be maintained. If the MD5 value registered for your read file is incorrect, you can supply a corrected version.
To do this:. One of the following commands will work, if you supply the correct filename:. Windows users should see the Microsoft Support Article on this subject.
If your error requires a new version of the file be uploaded, you have two options for this. You should first consider whether your file was originally uploaded to a sub-directory. The below error describes a file which was uploaded to a subdirectory:. The replacement file must be uploaded to this same subdirectory, as this is where the processing pipeline expects to find it.
Having determined this, refer to the relevant section below. In either case, you may need to update the MD5 value if the originally registered value was correct for the originally uploaded file. Please view our guidance on the Webin File Uploader. This will conveniently allow you to upload your file to the top level of your submission directory.
You will need to upload your file using FTP Client. There are various options for doing this, described at the linked page. Once you arrive in the desired directory, proceed to upload the files. Written By Sapna Trivedi. Approved By Vishal Sharma. Updated On Jan 04, Checksum is a significant indicator of the integrity of the data being read.
The stored data is associated with hexadecimal value called Checksum. Stellar Data Recovery offers a complete range of data recovery option to recover deleted data according to different data loss scenarios. Choose the most preferable data recovery option as per your need. If it finds Checksum failure, it throws an error message. And the complete error message looks like the one given below:. The causes of data inconsistency reported by Incorrect Checksum error might be the followings:.
As the cause of this error is NOT always the corrupt database or data, restore or repair should be the last options to fix the Checksum error and recover the data. Instead, you must try to diagnose the possibility of other basic causes, and fix them first. You can run this command for the affected database to check its consistency, since you already have the details of the affected Database from the Checksum error.
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